Nils Homer

Nils Homer

Month: December 2017

Bioinformatic Tool Series: SAM to FASTQ with UMIs and Barcodes

December 14, 2017Bioinformatics, Bioinformatics Tools Series No Comments

This continues the series of posts meant to help you write concise and well-tested bioinformatic tools. Today I’ll briefly describe a tool named SamToFastq that converts a SAM (or BAM) to FASTQ, when the SAM has bases and qualities stored in auxiliary tags that need to be included in the FASTQs bases and qualities. This … Read More

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  • DemuxFastqs with multiple FASTQs per Read
  • Bioinformatic Tool Series: SAM to FASTQ with UMIs and Barcodes
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  • Bioinformatics Tools Series: Writing a SAM or BAM file
  • Bioinformatics Tools Series: Reading a SAM or BAM file

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